Members
Berend Snel
Professor
Rob de Boer
Professor
Ronald Bontrop
Professor
Paulien Hogeweg
Honorary professor
Bas E Dutilh
PI
Can Kesmir
PI
Kirsten ten Tusscher
PI
Michael F Seidl
PI
Rutger Hermsen
PI
Alexander Schönhuth
Senior researcher
Basten Snoek
Senior researcher
John van Dam
Post-Doc
Working on: functional genomics and data integration (supervisor: Berend Snel)
Louis Daniel Weise
Post-Doc
Working on: plant root development (supervisor: Kirsten ten Tusscher)
Marleen Balvert
Post-Doc
Working on: computational metagenomics (supervisor: Bas E Dutilh)
Arpit Chandan Swain
PhD candidate
Working on: Modelling memory T cell maintenance (supervisor: Rob de Boer)
FA Bastiaan von Meijenfeldt
PhD candidate
Working on: modelling of metagenomic community dynamics (supervisors: Bas Dutilh, Berend Snel, Paulien Hogeweg)
Bram van Dijk
PhD candidate
Working on: evolution and evolvability in microbial ecosystems (supervisor: Paulien Hogeweg)
Eva Deutekom
PhD candidate
Hilje Doekes
PhD candidate
Working on: the evolution and dynamics of bacterial interactions (supervisor: Rutger Hermsen)
Jeroen Meijer
PhD candidate
Working on: the evolution of microbial ecosystems in multilevel models (supervisors: Bas E Dutilh, Paulien Hogeweg)
Julian Vosseberg
PhD candidate
Working on: gene duplications during eukaryogenesis (supervisor: Berend Snel)
Juliane Schröter
PhD candidate
Working on: HIV modelling in children, viral and immune system dynamics associated with response to ART (supervisor: Rob de Boer)
Laura van Rooijen
PhD candidate
Working on: evolution of the kinetochore complex (supervisor: Berend Snel)
Laurens Krah
PhD candidate
Working on: autocorrelations between mutations, effects of stochasticity of protein expression on bacterial growth (supervisor: Rutger Hermsen)
Leny van Wijk
PhD candidate
Working on: kinase evolution and function (supervisor: Berend Snel)
Patrick de Jonge
PhD candidate
Working on: high troughput phage identification methods (supervisors: Bas Dutilh, Stan Brouns (TU Delft), Berend Snel)
Peter de Greef
PhD candidate
Working on: dynamics of immune repertoires (supervisor: Rob de Boer)
Sam von der Dunk
PhD candidate
Working on: modelling endosymbiosis and the evolution of genomes and networks during eukaryogenesis (supervisors: Berend Snel, Paulien Hogeweg)
Thea van den Berg
PhD candidate
Working on: root system adaptation (supervisor: Kirsten ten Tussher)
Bart Fölker
Research Assistant
Working on: modelling root responses to flooding (supervisor: Kirsten ten Tusscher)
Nikos Pappas
Research Assistant
Working on: viral metagenomics (supervisor: Bas E Dutilh)
Anastasia Galani
MSc student
Working on: metagenomics of sponge-associated microbes (supervisor: Bas E Dutilh)
Divyae Prasad
MSc student
Working on: developing deep neural networks of evolutionary (pan)genomics (supervisors: Marleen Balvert, Alexander Schönhuth)
Glenn Mulder
MSc student
Working on: Temperate phage decision-making through individual-based evolutionary modelling (supervisor: Rutger Hermsen)
Karim hajji
MSc student
Working on: Modelling evolving gene networks (supervisor: Paulien Hogeweg)
Laura van Schijndel
MSc student
Working on: Quantifying natural selection on different spatial scales (supervisor: Rutger Hermsen)
Martijn Bouman
MSc student
Working on: Evolution on multiple time scales (supervisor: Rutger Hermsen)
Meine D Boer
MSc student
Working on: gap filling FBA models with deep learning (supervisor: Bas E Dutilh)
Michelle Schinkel
MSc student
Working on: extend of introns predating duplications during eukaryogenesis (supervisor: Julian Vossenberg)
Reinder Bosman
MSc student
Working on: nucleotide management in the RNA world (supervisor: Paulien Hogeweg)
Richard Gremmen
MSc student
Working on: clustering phages (supervisors: Basten Snoek, Bas E Dutilh)
Stijn Andeweg
MSc student
Working on: the influence of Human Leukocyte Antigen (HLA) on the human gut microbiota (supervisors: Bas E Dutilh, Can Kesmir)
Xin Zhang
MSc student
Working on: gene family evolution in fungi (supervisor: Michael F Seidl)
Sander Vermeulen
BSc student
Working on: creating a pipeline to compare phage abundance in two viromes (supervisors: Nikkos Pappas, Bas E Dutilh)
