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Publications: 2001

Theoretical Biology / Bioinformatics Group, Utrecht University

Bernus O., Wilders R. ADN Zemlin C.W., Verschelde H. & Panfilov A.V. (2001).
A realistic and efficient model of human ventricular tissue.
Proc. Physiol. Soc. New Zealand, 20,Suppl.1: 18.

Bloch H.A., Petersen M., Sperotto M.M., Kesmir C., Radzikowski L., Jacobsen S. & Sondergaard I. (2001).
Identification of barley and rye varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry with neural networks.
Rapid. Commun. Mass. Spectrom., 15: 440-445. MEDLINE.

Borghans J.A.M. & De Boer R.J. (2001).
Diversity in the Immune System.
In: Segel L.A. & Cohen I.R., eds., Design Principles for the Immune System and Other Distributed Autonomous Systems, pp. 161-183. Oxford University Press, Oxford, U.K.

De Boer R.J. & Freitas A. A. Perelson A.S. (2001).
Resource competition determines selection of B cell repertoires.
J. theor. Biol., 212: 333-343. MEDLINE. DownLoad PDF.

De Boer R.J., Oprea M., Antia R., Murali-Krishna K., Ahmed R. & Perelson A.S. (2001).
Recruitment Times, Proliferation, and Apoptosis Rates during the CD8+ T-Cell Response to Lymphocytic Choriomeningitis Virus.
J. Virol., 75: 10663-10669. MEDLINE. DownLoad PDF.

De Ronde A., Van Dooren M., Van Der Hoek L., Bouwhuis D., De Rooij E., Van Gemen B., De Boer R.J. & Goudsmit J. (2001).
Establishment of new transmissible and drug-sensitive human immunodeficiency virus type 1 wild types due to transmission of nucleoside analogue-resistant virus.
J. Virol., 75: 595-602. MEDLINE. DownLoad PDF.

Korber B., Gaschen B., Yusim K., Thakallapally R., Kesmir C. & Detours V. (2001).
Evolutionary and immunological implications of contemporary HIV-1 variation.
Br. Med. Bull., 58: 19-42. MEDLINE. DownLoad PDF.

Lukashov V.V., Huismans R., Jebbink M.F., Danner S.A., De Boer R.J. & Goudsmit J. (2001).
Selection by azt and rapid replacement in the absence of drugs of hiv type 1 resistant to multiple nucleoside analogs.
AIDS Res. Hum. Retroviruses., 17: 807-818. MEDLINE. DownLoad PDF.

Marée A.F.M. & Hogeweg P. (2001).
How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum.
Proc. Natl. Acad. Sci. USA, 98: 3879-3883. MEDLINE. DownLoad PDF.

Müller V., Marée A.F. & De Boer R.J. (2001).
Small variations in multiple parameters account for wide variations in HIV-1 set-points: a novel modelling approach.
Proc. R. Soc. Lond. B. Biol. Sci., 268: 235-242. MEDLINE. DownLoad PDF.

Müller V., Marée A.F.M. & De Boer R.J. (2001).
Release of virus from lymphoid tissue affects human immunodeficiency virus type 1 and hepatitis C virus kinetics in the blood.
J. Virol., 75: 2597-2603. MEDLINE. DownLoad PDF.

Panfilov A.V. & Pertsov A.M. (2001).
Ventricular fibrillation: evolution of the multiple-wavelet hypothesis.
Phil. Trans. R. Soc. Lond. A, 359: 1315-1325. DownLoad PDF.

van Boxtel J.J.A. & Panfilov A.V. (2001).
Spiral breakup in an array of coupled cells. the role of the gap junctional conductance.
XXXIVth International Congress of Physiological Sciences, Christchurch, New Zealand, abstract 440.

Zemlin C.W., Herzel H., Yen Ho S.Y. & Panfilov A.V. (2001).
A realistoc and efficient model of excitation propagation in the human atria.
In: Virag N., Blank O. & Kappemberger L., eds., Computer simulation and experimental assessment of cardiac electrophysiology, pp. 29-34. Future publishing Company Inc., Armonk N.Y.

Zemlin C.W. & Panfilov A.V. (2001).
Spiral waves in excitable media with negative restitution.
Phys. Rev. E, 63: 041912. MEDLINE. DownLoad PDF.