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Publications: 2000
Theoretical Biology / Bioinformatics Group, Utrecht University
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Cohen Stuart J.W., Hazebergh M.D., Hamann D., Otto S.A., Borleffs J.C.,
Miedema F., Boucher C.A. & De Boer R.J. (2000).
- The dominant source of CD4+ and CD8+ T-cell activation in HIV
infection is antigenic stimulation.
J. Acquir. Immune Defic. Syndr., 25: 203-211.
MEDLINE.
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Hazenberg M.D., Cohen Stuart J.W., Otto S.A., Borleffs J.C., Boucher C.A.,
De Boer R.J., Miedema F. & Hamann D. ( 2000a).
- T-cell division in human immunodeficiency virus (HIV)-1 infection
is mainly due to immune activation: a longitudinal analysis in patients
before and during highly active antiretroviral therapy (HAART).
Blood, 95: 249-255.
MEDLINE.
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Hazenberg M.D., Otto S.A., Stuart J.W., Verschuren M.C., Borleffs J.C.,
Boucher C.A., Coutinho R.A., Lange J.M., De Wit T.F., Tsegaye A., Van Dongen
J.J., Hamann D., De Boer R.J. & Miedema F. (2000b).
- Increased cell division but not thymic dysfunction rapidly affects
the T-cell receptor excision circle content of the naive T cell
population in HIV-1 infection.
Nat. Med., 6: 1036-1042.
MEDLINE.
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Hogeweg P. (2000a).
- Evolving mechanisms of morphogenesis: on the interplay between
differential adhesion and cell differentiation.
J. theor. Biol., 203: 317-333.
MEDLINE.
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Hogeweg P. (2000b).
- Shapes in the shadow: Evolutionary dynamics of morphogenesis.
Artif. Life, 6: 85-101.
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Kesmir C., Borghans J.A.M. & De Boer R.J. ( 2000).
- Diversity of human alpha beta T cell receptors.
Science, 288: 1135a.
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Lauemøller S., Kesmir C., Corbet S.L., Fomsgaard A., Holm A., Claesson
M.H., Brunak S. & Buus S. (2000).
- Identifying cytotoxic T cell epitopes from genomic and proteomic
information: "The human MHC project.".
Rev. Immunogenet., 2(4): 477-491.
MEDLINE.
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Marée A.F.M., Keulen W., Boucher C.A.B. & De Boer R.J. (2000).
- Estimating relative fitness in viral competition experiments.
J. Virol., 74: 11067-11072.
MEDLINE.
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Noest A.J. (2000).
- Designing lymphocyte functional structure for optimal signal
detection: Voilà, T cells.
J. theor. Biol., 207: 195-216.
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Pagie L.W.P. & Hogeweg P. (2000a).
- Individual- and population-based diversity in
restriction-modification systems.
Bull. Math. Biol., 62: 759-774.
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Pagie L.W.P. & Hogeweg P. (2000b).
- Information integration and red queen dynamics in coevolutionary
optimization.
Proceedings CEC 2000, pp. 797-806.
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Pagie L.W.P. & Hogeweg P. (2000c).
- Optimization as side-effect of evolving allelopathic diversity.
vol. 1917 of Lecture Notes in Computer Science, pp. 797-806.
Proceedings PPSN VI.
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Panfilov A.V., Müller S.C., Zykov V.Z. & Keener J.P. (2000).
- Elimination of spiral waves in cardiac tissue by multiple electrical
shocks.
Phys.Rev.E, 61: 4644-4647.
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Rizzardi G.P., De Boer R.J., Hoover S., Tambussi G., Chapuis
A., Halkic N., Bart P.A., Miller V., Staszewski S., Notermans D.W., Perrin
L., Fox C.H., Lange J.M., Lazzarin A. & Pantaleo G. (2000).
- Predicting the duration of antiviral treatment needed to suppress
plasma HIV-1 RNA.
J. Clin. Invest., 105: 777-782.
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Zuidema W.H. & Hogeweg P. (2000).
- Selective advantages of syntactic language - a model study.
Proceedings of the 22nd Annual Meeting of the Cognitive Science
Society. Lawrence Erlbaum Associates, Hillsdale, USA.
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