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Publications: 1999

Theoretical Biology / Bioinformatics Group, Utrecht University

Borghans J.A., Noest A.J. & De Boer R.J. (1999a).
How specific should immunological memory be?
J. Immunol., 163: 569-575. MEDLINE. DownLoad PDF.

Borghans J.A., Taams L.S., Wauben M.H. & De Boer R.J. ( 1999b).
Competition for antigenic sites during T cell proliferation: a mathematical interpretation of in vitro data.
Proc. Natl. Acad. Sci. U.S.A., 96: 10782-10787. MEDLINE. DownLoad PDF.

Clark D.R., De Boer R.J., Wolthers K.C. & Miedema F. (1999).
T cell dynamics in HIV-1 infection.
Adv. Immunol., 73: 301-327. MEDLINE.

Dandekar T., Schuster S., Snel B., Huynen M. & Bork P. (1999).
Pathway alignment: application to the comparative analysis of glycolytic enzymes.
Biochem. J., 343: 115-124. MEDLINE. DownLoad PDF.

Huynen M.A., Dandekar T. & Bork P. (1999).
Variation and evolution of the citric-acid cycle: a genomic perspective.
Trends Microbiol., 7: 281-291. MEDLINE. DownLoad PDF.

Kesmir C. & De Boer R.J. (1999).
A mathematical model on germinal center kinetics and termination.
J. Immunol., 163: 2463-2469. MEDLINE. DownLoad PDF.

Maree A.F., Panfilov A.V. & Hogeweg P. (1999a).
Migration and thermotaxis of Dictyostelium discoideum slugs, a model study.
J. theor. Biol., 199: 297-309. MEDLINE. DownLoad PDF.

Maree A.F., Panfilov A.V. & Hogeweg P. (1999b).
Phototaxis during the slug stage of Dictyostelium discoideum: a model study.
Proc.R.Soc.Lond., 266: 1351-1360. DownLoad PDF.

Pagie L. & Hogeweg P. (1999).
Colicin diversity: a result of eco-evolutionary dynamics.
J. theor. Biol., 196: 251-261. MEDLINE. DownLoad PDF.

Panfilov A.V. (1999a).
Three-dimensional organization of electrical turbulence in the heart.
Phys. Rev. E, 59: R6251-R6254. MEDLINE. DownLoad PDF.

Panfilov A.V. (1999b).
Three dimensional wave propagation in mathematical models of ventricular fibrillation.
In: Zipes D.P. & Jalife J., eds., Cardiac Electrophysiology. From cell to bedside, pp. 271-276. Sauners Company.

Savill N.J. & Hogeweg P. (1999).
Competition and dispersal in predator-prey waves.
Theor. Popul. Biol., 56: 243-263. MEDLINE. DownLoad PDF.

Snel B., Bork P. & Huynen M.A. (1999).
Genome phylogeny based on gene content.
Nat. Genet., 21: 108-110. MEDLINE. DownLoad PDF.

Van Nimwegen E., Crutchfield J.P. & Huynen M. (1999).
Neutral evolution of mutational robustness.
Proc. Natl. Acad. Sci. U.S.A., 96: 9716-9720. MEDLINE. DownLoad PDF.

Wolthers K.C., Noest A.J., Otto S.A., Miedema F. & De Boer R.J. ( 1999).
Normal telomere lengths in naive and memory CD4+ T cells in HIV type 1 infection: a mathematical interpretation.
AIDS Res. Hum. Retroviruses., 15: 1053-1062. MEDLINE.

Yamamoto T. & Hogeweg P. (1999).
Evolution to complexity: replication, elongation and assembly in an rna world.
In: Floreano D., Nicoud J.D. & Mondada F., eds., Advances in Artificial Life, pp. 422-426. Springer verlag. DownLoad PDF.