Virtual Microbes 2.0
Input-reactions (use stoichiometry, e.g. 2A + B -> 3C) with optional max_rate ( ; max_rate) :
ATP + Cext -> C 1E -> 1D + 4ATP 1A -> 1H + 3ATP 1C -> 1B + 3ATP ; 0.5 1C -> 1D + 5ATP 1A -> 1B + 2ATP 1G -> 1D + 2ATP 1H -> 1D + 1ATP 1B -> 1D + 2ATP 1A -> 1D + 4ATP 1E -> 1G + 2ATP 1F -> 1H + 2ATP 1E -> 1H + 3ATP 1C -> 1H + 4ATP 1C -> 1F + 2ATP 1A -> 1G + 2ATP 1C -> 1G + 3ATP 1C -> 1E + 1ATP 1F -> 1G + 1ATP 1A -> 1F + 1ATP 1E -> 1B + 2ATP 1C -> 1A + 1ATP 1G + 1H -> 1C 2D -> 1E 2B -> 1C 1F + 1H -> 1C 1B + 1G -> 1C 2D -> 1B 1D + 1H -> 1B 2D -> 1A 1D + 1H -> 1C 1D + 1H -> 1G 1G + 1H -> 1A 1D + 1F -> 1E 1G + 1H -> 1E 1D + 1H -> 1A 1D + 1H -> 1F 1D + 1F -> 1A 1D + 1H -> 1E 1D + 1G -> 1A 1B + 1D -> 1F 2D -> 1G 1D + 1G -> 1F 2D -> 1H
Global rate modifier:
0.05
Decay Internal:
0.01
Decay External:
0.001
Decay Energy:
0.05
Rerun at max rates
Find best out of 100 random networks
Master Equations