Publications of Paulien Hogeweg since 2010

Toward a theory of multilevel evolution: long-term information integration shapes the mutational landscape and enhances evolvability.
chapter 10 of Soyer, O.S. (ed.) Evolutionary Systems Biology, Springer (2012)
and MEDLINE Adv Exp Med Biol. 2012;751:195-224

Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life.
Takeuchi N, Hogeweg P.
Phys Life Rev. 2012 Jun 13. [Epub ahead of print]

Reply to the commentaries on "Evolutionary dynamics of RNA-like replicator systems: A bioinformatic approach to the origin of life"
Takeuchi N, Hogeweg P.
Phys Life Rev. 2012 Jul 27. [Epub ahead of print]

Co-evolution and ecosystem based problem solving
F.K. de Boer, Hogeweg P,
Ecological Informatics 7:47-58, 2012 - Elsevier

Gene duplications contribute to the overrepresentation of interactions between proteins of a similar age.
Fokkens L, Hogeweg P, Snel B.
BMC Evol Biol
. 2012 Jun 25;12(1):99. [Epub ahead of print]

Morphogengineering roots: comparing mechanisms of morphogen gradient formation.
Grieneisen VA, Scheres B, Hogeweg P, Maree AF.
BMC Syst Biol
. 2012 May 14;6(1):37. [Epub ahead of print]

Less can be more: RNA-adapters may enhance coding capacity of replicators
de Boer FK, Hogeweg P.
PLoS One
. 2012;7(1):e29952. Epub 2012 Jan 23.

Virtual genomes in flux: an interplay of neutrality and adaptability explains genome expansion and streamlining.
Cuypers TD, Hogeweg P
Genome Biol Evol. 2012;4(3):212-29. Epub 2012 Jan 10

Evolution of networks for body plan patterning; interplay of modularity, robustness and evolvability.
Ten Tusscher KH, Hogeweg P.
PLoS Comput Biol
. 2011 Oct;7(10):e1002208. Epub 2011 Oct 6.

The roots of bioinformatics in theoretical biology.
PLoS Comput Biol
. 2011 Mar;7(3):e1002021. Epub 2011 Mar 31.

On the origin of DNA genomes: evolution of the division of labor between template and catalyst in model replicator systems.
Takeuchi N, Hogeweg P, Koonin EV.
PLoS Comput Biol
. 2011 Mar;7(3):e1002024. Epub 2011 Mar 24.

Modelling the dynamics of viral suppressors of RNA silencing.
Groenenboom MA, Hogeweg P.
J R Soc Interface
. 2012 Mar 7;9(68):436-47. Epub 2011 Aug 17

Is RNA-dependent RNA polymerase essential for transposon control?
Crombach A, Hogeweg P.
BMC Syst Biol
. 2011 Jun 29;5:104.

Multilevel cellular automata as a tool for studying bioinformatic processes
Hogeweg P.
In: Hoekstra A.G., Kroc J. & Sloot P.M.A., eds., Simulating Complex Systems by Cellular Automata, Understanding Complex Systems, pp. 19-28. Springer, 1st edn. (2010)

Eco-evolutionary dynamics, coding structure and the information threshold.
de Boer FK, Hogeweg P.
BMC Evol Biol
. 2010 Nov 24;10:361

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